Best Papers 1. Ariel S. Schwartz and Lior Pachter Multiple Alignment by Sequence Annealing 2. Andreas Hildebrandt, Hans-Peter Lenhof, Ralf Blossey, Sergej Rjasanow and Oliver Kohlbacher Electrostatic Potentials of Proteins in Water: A Structured Continuum Approach 3. Matthias Bernt, Daniel Merkle and Martin Middendorf Using Median Sets for Inferring Phylogenetic Trees Best Student Papers 1. Fabian Birzele, Jan Erik Gewehr, Gergely Csaba and Ralf Zimmer Vorolign - Fast Structural Alignment Using Voronoi Contacts 2. Barak Raveh, Ofer Rahat, Ronen Basri and Gideon Schreiber Rediscovering Secondary Structures as Network Motifs - An Unsupervised Learning Approach 3. Jennifer Listgarten, Sam T. Roweis, Radford M. Neal, Peter Wong and Andrew Emili Difference Detection in LC-MS Data for Protein Biomarker Discovery Top 5 Posters N01. Irena I. Artamonova, Goar Frishman, Mikhail S. Gelfand and Dmitrij Frishman Association Rule Mining and Protein Databases: Exceptions Point to Annotation Errors M36. Oranit Dror, Yuval Inbar, Dina Schneidman, Ruth Nussinov and Haim Wolfson Pharmacophore Detection: Multiple Flexible Alignment of Drug-Like Molecules B12. Yonit Halperin, Chaim Linhart, Gidi Weber and Ron Shamir The AMADEUS Motif Discovery Tool B23. Orna Man and Yitzhak Pilpel Phenotypic Divergence among Diverse Yeast Species is Affected by Translational Control Signals in Protein Coding Sequence H06. Israel Steinfeld, Ron Shamir and Martin Kupiec A Systematic Analysis of Chromatin Modifiers that Act as Transcriptional Co-Factors in the Yeast Genome